pypi codecov Stars Gitmoji

Pytometry: Flow & mass cytometry analytics#

This package provides efficient and scalable handling of flow and mass cytometry data analysis. It provides

  • the functionality to read in flow data in the fcs file format as anndata objects

  • flow and mass cytometry specific preprocessing tools

  • access to the entire scanpy workflow functionality

  • GPU support through rapids

Follow https://twitter.com/marenbuettner for updates.

For the code enthusiasts: Find our code base on Github.

Installation#

You can install pytometry via pip from PyPI:

pip install pytometry

or from GitHub:

pip install git+https://github.com/buettnerlab/pytometry.git

Updates#

  • October 12th 2022: First public release announcement on Twitter

Citation#

Pytometry is currently a pre-print on bioRxiv.