pytometry.preprocessing.split_signal#

pytometry.preprocessing.split_signal(adata, var_key=None, key='signal_type', option='area', data_type='facs', inplace=True)#

Method to filter out height or area data.

Parameters

  • adata (AnnData) – AnnData object containing data.

  • var_key (str, optional) – key where to check if a feature is an area, height etc. type of value. Use var_names if None.

  • key (str, optional) – key for adata.var where the variable type is stored. Defaults to ‘signal_type’.

  • option (str, optional) – for choosing ‘area’ or ‘height’ in case of FACS data and ‘element’ for cyTOF data. Defaults to ‘area’.

  • data_type (str, optional) – either ‘facs’ or ‘cytof’/’cyTOF’. Defaults to ‘facs’.

  • inplace (bool, optional) – Return a copy instead of writing to adata. Defaults to True.

Returns

AnnData: AnnData object containing area or height data in .var

Return type

Depending on inplace, returns or updates adata with the following fields

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